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周永锋课题组
Yong-feng Zhou lab
Yong-feng Zhou lab
主要发表文章：
Liu Z, Wang X, Cao S, et al. Machine learning empowers precise discovery of disease-resistance genes in plants[J]. Plant Physiology, 2026: kiag276. [机器学习能够精准地发现植物中的抗病基因]
Peng Y, Zhou L, Fang X, et al. Haplotype‐Resolved 3D Genomic Landscapes and Their Impacts on Agronomic Traits in Grapevine[J]. Advanced Science, 2026: e21838. [基于单倍型解析的三维基因组图谱及其对葡萄作物性状的影响]
Ma Z, Xu X, Peng W, et al. Population genomics reveals association of transposable elements variants with climatic adaptation in wild Amur grape[J]. Nature Communications, 2026. [群体基因组学揭示了野生山葡萄中转座元件变异与气候适应之间的关联]
Su Y, Hao Y, Cao X, et al. Dissecting the genetic basis of climatic adaptation in wild relatives (Malus baccata) for climate‐resilient apple breeding[J]. Journal of Integrative Plant Biology, 2026. [解析野生亲缘种（山荆子）的遗传基础，以用于培育具有气候适应能力的苹果品种]
Zhang, F., Wei, C., Shi, X. et al. Medicago super-pangenome reveals adaptive advantages and evolutionary constraints in autotetraploid alfalfa. Nat Commun (2025). https://doi.org/10.1038/s41467-025-67280-9 [苜蓿超级泛基因组揭示了四倍体苜蓿的适应性优势和进化限制]
Zhong H, Shi X, Zhang F, et al. Haplotype-resolved assemblies provide insights into genomic makeup of the oldest grapevine cultivar (Munage) in China[J]. Horticulture Research, 2025: uhaf274. [基于单倍型解析的组装技术揭示了中国最古老的葡萄品种（木纳格）的基因组成情况。]
Bilal Ahmad, Ying Su, Rida Arshad, Tayyaba Razzaq, Yi Zhang, Ting Hou, Chaochao Li, Zhongxin Jin, Chengjie Chen, Peng Wang, Melanie J Wilkinson, Yibo Bai, Yeyuan Chen, Yu Zhang, Zhiguo Dang, Yongfeng Zhou, Xinmin Tian, Jianfeng Huang, Integrative Genomics for Mango Genetics and Breeding, Horticulture Research, 2025;, uhaf260, https://doi.org/10.1093/hr/uhaf260 [芒果遗传与育种的整合基因组学]
Du M, Zhang F, Wang X, et al. Structural and Deleterious Burdens and Their Effects on Yield Traits in Foxtail Millet Domestication[J]. Available at SSRN 5237388. [黍的结构性及有害性负担及其对产量性状的影响——关于黍驯化的研究]
Arshad R, Razzaq T, Ahmad B, et al. Banana breeding by genome design[J]. Journal of Integrative Plant Biology, 2025. [香蕉基因组设计育种]
He F, Xu M, Long R, et al. Integrative multi-omics and genomic prediction reveal genetic basis of early salt tolerance in alfalfa[J]. Journal of Genetics and Genomics, 2025. [整合多组学和基因组预测揭示了苜蓿耐盐性的遗传基础]
Liu Y, Dong Y, Fang X, et al. Pangenomics and single-cell transcriptomics uncover the genetic basis of continuous bearing trait in grapevine[J]. Horticulture Research, 2025: uhaf228. [泛基因组学和单细胞转录组学揭示了葡萄树连续结实性状的遗传基础]
Hui Xue, Zhongjie Liu, Wenwen Liu, Guizhou Huang, Xu Wang, Mengrui Du, Chaochao Li, Xiaodong Xu, Jiacui Li, Xuanwen Yang, Hua Xiao, Yanling Peng, Yongfeng Zhou*. The genomic design of fruit metabolomes. Plant communications, Volume 0, Issue 0, 101484 [水果代谢组的基因组设计]
Hou, T., Xu, Y., Dong, Y., Yao, J., Zhang, T., Zhou, L., Su, X., Zhang, Y., Zhang, Y., Chen, C. et al. (2025). The cytonuclear interactions during grapevine domestication. J. Integr. Plant Biol. https://doi.org/10.1111/jipb.13968 [核质互作对葡萄驯化与育种的影响]
Li C, Yuan Y, Nie Z, et al. The haplotype-resolved telomere-to-telomere genome and OMICS analyses reveal genetic responses to tapping in rubber tree[J]. Nature Communications, 2025, 16(1): 6255. [通过单倍型解析的端粒到端粒基因组及组学分析揭示了橡胶树利用过程中的遗传反应]
Ahmad B, Su Y, Hao Y, et al. Mango Pangenome Reveals Dramatic Impacts of Reference Bias on Genomic Analyses[J]. Horticulture Research, 2025: uhaf166. [芒果泛基因组揭示参考偏差对基因组分析的显著影响]
Peipei Wang, Tingting Ren, Ruyue You, Yazheng Cao, Yang Xu, Guo Wei, Yuting Liu, Xinglong Ji, Yiran Ren, Kekun Zhang, Yongfeng Zhou, Lei Sun, Xiangpeng Leng, A trans-long-chain prenyl diphosphate synthase promotes ubiquinone 10 biosynthesis in grape, Plant Physiology, Volume 198, Issue 3, July 2025, kiaf268, https://doi.org/10.1093/plphys/kiaf268 [一种长链预烷基二磷酸酯合酶能够促进葡萄中泛醌 10 的生物合成]
Yang X, Yang W, Li J, et al. Major Facilitator Superfamily transporters balance sugar metabolism in peach[J]. Plant Physiology, 2025, 198(1): kiaf192. [主要的促进因子超家族转运蛋白调节着桃子中的糖代谢过程]
Yu Gan, Zhenya Liu, Fan Zhang, Qi Xu, Xu Wang, Hui Xue, Xiangnian Su, Wenqi Ma, Qiming Long, Anqi Ma, Guizhou Huang, Wenwen Liu, Xiaodong Xu, Lei Sun, Yingchun Zhang, Yuting Liu, Xinyue Fang, Chaochao Li, Xuanwen Yang, Pengcheng Wei, Xiucai Fan, Chuan Zhang, Pengpai Zhang, Chonghuai Liu, Lianzhu Zhou, Zhiwu Zhang, Cong Tan, Yiwen Wang*, Zhongjie Liu*, Yongfeng Zhou*. Deep learning empowers genomic selection of pest-resistant grapevine, Horticulture Research, 2025;, uhaf128, [深度学习使抗虫葡萄的基因组选择成为可能]
Mengyan Zhang, Xiaodong Xu, Tianhao Zhang, Zhenya Liu, Xingyi Wang, Xiaoya Shi, Wenjing Peng, Xu Wang, Zhuyifu Chen, Ruoyan Zhao, Wenrui Wang, Yi Zhang, Zhongxin Jin, Yongfeng Zhou, Zhiyao Ma, The dynamics of wild Vitis species in response to climate change facilitate the breeding of grapevine and its rootstocks with climate resilience, Horticulture Research, 2025;, uhaf104, https://doi.org/10.1093/hr/uhaf104 [野生葡萄品种对气候变化的动态响应促进了葡萄及其砧木的气候适应性育种]
Hua Xiao, Yue Wang, Wenwen Liu, Xiaoya Shi, Siyang Huang, Shuo Cao, Qiming Long, Xu Wang, Zhongjie Liu, Xiaodong Xu, Yanling Peng, Pengfei Wang, Zhonghao Jiang, Summaira Riaz, Andrew M. Walker, Brandon S. Gaut, Sanwen Huang & Yongfeng Zhou*. Impacts of reproductive systems on grapevine genome and breeding. Nature Communications 16, 2031 (2025). https://doi.org/10.1038/s41467-025-56817-7 [生殖系统对葡萄基因组和育种的影响]
Y. Peng,Y. Wang,Y. Liu,X. Fang,L. Cheng,Q. Long,D. Su,T. Zhang,X. Shi,X. Xu,Q. Xu,N. Wang,F. Zhang,Z. Liu,H. Xiao,J. Yao,L. Tian,W. Hu,S. Chen,H. Wang,S. Huang,B.S. Gaut,& Yongfeng Zhou*, The genomic and epigenomic landscapes of hemizygous genes across crops with contrasting reproductive systems, PNAS. 122 (6) e2422487122 (2025). [葡萄半合子基因的遗传特征及其育种意义]
Wang Y, Cao S, Liu Z, et al. PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based Pangenomes[J]. 2025. [PanTE：基于图的泛基因组中转座因子发现的综合框架]
Zhang Z, Liu W, Zhang T, et al. Population genomics of Vitis pseudoreticulata reveals the genetic basis of fungal resistance in grapevine[J]. Horticultural Plant Journal, 2025. [华东葡萄的群体基因组学揭示了葡萄抗真菌的遗传基础]
Zhongjie Liu, Nan Wang, Ying Su, Qiming Long, Yanling Peng, Lingfei Shangguan, Fan Zhang, Shuo Cao, Xu Wang, Mengqing Ge, Hui Xue, Zhiyao Ma, Wenwen Liu, Xiaodong Xu, Chaochao Li, Xuejing Cao, Bilal Ahmad, Xiangnian Su, Yuting Liu, Guizhou Huang, Mengrui Du, Zhenya Liu, Yu Gan, Lei Sun, Xiucai Fan, Chuan Zhang, Haixia Zhong, Xiangpeng Leng, Yanhua Ren, Tianyu Dong, Dan Pei, Xinyu Wu, Zhongxin Jin, Yiwen Wang, Chonghuai Liu, Jinfeng Chen, Brandon Gaut, Sanwen Huang, Jinggui Fang*, Hua Xiao* & Yongfeng Zhou*. Grapevine pangenome facilitates trait genetics and genomic breeding. Nature Genetics (2024). https://doi.org/10.1038/s41588-024-01967-5 [葡萄泛基因组促进性状遗传和基因组育种]
Xu Wang, Zhongjie Liu, Fan Zhang, Hua Xiao, Shuo Cao, Hui Xue, Wenwen Liu, Ying Su, Zhenya Liu, Haixia Zhong, Fuchun Zhang, Bilal Ahmad, Qiming Long, Yingchun Zhang, Yuting Liu, Yu Gan, Ting Hou, Zhongxin Jin, Xinyu Wu, Guotian Liu, Yiwen Wang, Yanling Peng, and Yongfeng Zhou*. Integrative genomics reveals the polygenic basis of seedlessness in grapevine[J]. Current Biology, 2023: 2023.12. 22.573032. [整合基因组学揭示了葡萄无核基础的多基因性]
Xiaoxia Li, Xiaofan Dai, Huiying He, Yang Lv, Longbo Yang, Wenchuang He, Congcong Liu, Hua Wei, Xiangpei Liu, Qiaoling Yuan, Xianmeng Wang, Tianyi Wang, Bintao Zhang, Hong Zhang, Wu Chen, Yue Leng, Xiaoman Yu, Hongge Qian, Bin Zhang, Mingliang Guo, Zhipeng Zhang, Chuanlin Shi, Qianqian Zhang, Yan Cui, Qiang Xu, Xinglan Cao, Dandan Chen, Yongfeng Zhou*, Qian Qian*, Lianguang Shang*, A pan-TE map highlights transposable elements underlying domestication and agronomic traits in Asian rice, National Science Review, 2024;, nwae188, https://doi.org/10.1093/nsr/nwae188 [泛TE图谱突出了亚洲水稻驯化和农艺性状背后的转座因子]
Ying Su, Xuanwen Yang, Yuwei Wang, Jialei Li, Qiming Long, Shuo Cao, Xu Wang, Zhenya Liu, Siyang Huang, Zhuyifu Chen, Yanling Peng, Fan Zhang, Hui Xue, Xuejing Cao, Mengyan Zhang, Gulbar Yisilam, Zhenzhou Chu, Yuan Gao, Yongfeng Zhou*, Zhongjie Liu*, Hua Xiao*, Xinmin Tian*, Phased Telomere-to-Telomere Reference Genome and Pangenome Reveal an Expansion of Resistance Genes during Apple Domestication, Plant Physiology, 2024;, kiae258, https://doi.org/10.1093/plphys/kiae258 [端粒-端粒参考基因组和泛基因组揭示了苹果驯化过程中抗性基因的扩增]
Fan Zhang, Ruicai Long, Zhiyao Ma, Hua Xiao, Xiaodong Xu, Zhongjie Liu, Chunxue Wei, Yiwen Wang, Yanling Peng, Xuanwen Yang, Xiaoya Shi, Shuo Cao, Mingna Li, Ming Xu, Fei He, Xueqian Jiang, Tiejun Zhang, Zhen Wang, Xianran Li, Long-Xi Yu, Junmei Kang, Zhiwu Zhang, Yongfeng Zhou*, Qingchuan Yang*, Evolutionary genomics of climatic adaptation and resilience to climate change in alfalfa, Molecular Plant, Volume 17, Issue 6, 2024, Pages 867-883, ISSN 1674-2052, https://doi.org/10.1016/j.molp.2024.04.013. [苜蓿气候适应和气候变化复原力的进化基因组学研究]
Xuanwen Yang, Ying Su, Siyang Huang, Qiandong Hou, Pengcheng Wei, Yani Hao, Jiaqi Huang, Hua Xiao, Zhiyao Ma, Xiaodong Xu, Xu Wang, Shuo Cao, Xuejing Cao, Mengyan Zhang, Xiaopeng Wen, Yuhua Ma, Yanling Peng, Yongfeng Zhou*, Ke Cao*, Guang Qiao*, Comparative population genomics reveals convergent and divergent selection in the Apricot-Peach-Plum-Mei Complex, Horticulture Research, 2024;, uhae109, https://doi.org/10.1093/hr/uhae109 [比较群体基因组学揭示了杏-桃-李-梅复合体的趋同选择和发散选择]
Tianhao Zhang, Wenjing Peng, Hua Xiao, Shuo Cao, Zhuyifu Chen, Xiangnian Su, Yuanyuan Luo, Zhongjie Liu, Yanling Peng, Xiping Yang, Guo-Feng Jiang*, Xiaodong Xu*, Zhiyao Ma*, Yongfeng Zhou*. (2024). Population genomics highlights structural variations in local adaptation to saline coastal environments in woolly grape. Journal of Integrative Plant Biology. [结构变异促进野生葡萄适应高盐海滨环境]
Qiming Long, Shuo Cao, Guizhou Huang, Xu Wang, Zhongjie Liu, Wenwen Liu, Yiwen Wang, Hua Xiao, Yanling Peng, Yongfeng Zhou, Population comparative genomic analyses unveil gene gain and loss during grapevine domestication, Plant Physiology, 2024;, kiae039, https://doi.org/10.1093/plphys/kiae039 [群体比较基因组学发现葡萄驯化过程中基因的得失]
Cheng H, Li C, Yuan Y, et al. The haplotype-resolved telomere-to-telomere genome and OMICS analyses reveal the genetic responses of tapping in rubber tree[J]. 2024. [单倍型端粒-端粒基因组和组学分析揭示了橡胶树采胶的遗传反应]
Yanhong Song, Yanling Peng, Lifeng Liu, Gang Li, Xia Zhao, Xu Wang, Shuo Cao, Aline Muyle, Yongfeng Zhou*, Houcheng Zhou*. Phased gap-free genome assembly of octoploid cultivated strawberry illustrates the genetic and epigenetic divergence among subgenomes[J]. Horticulture Research, 2023: uhad203. [八倍体栽培草莓的分阶段无间隙基因组组装说明了亚基因组之间的遗传和表观遗传差异]
Hua Xiao, Zhongjie Liu, Nan Wang, Brandon S. Gaut, and Yongfeng Zhou*. Reply to Blanco-Pastor: Introgression and heterozygosity complicated grapevine domestication[J]. PNAS, 2023, 120(49): e2314162120. [渗入和杂合性复杂的葡萄驯化]
Yue JY, Chen QY, Zhang SJ, Lin YZ, Ren WM, Li BJ, Wu Y, Wang YZ, Zhou YF*, Liu YS* (2023) Origin and evolution of the kiwifruit Y chromosome. Plant Biotechnology Journal https://doi.org/10.1111/pbi.14213 [猕猴桃Y染色体的起源和进化]
Huang HR, Liu X, Arshad R, Wang X, Li WM, Zhou YF*, Ge XJ* (2023) Telomere-to-telomere haplotype-resolved reference genome reveals subgenome divergence and disease resistance in triploid Cavendish banana. Horticulture Research uhad153. [T2T单倍型解析参考基因组揭示了三倍体卡文迪什香蕉的亚基因组分化和抗病性]
Wang N, Cao ST, Liu ZJ, Xiao H, Hu JB, Xu XD, Chen P, Ma ZY, Ye JL, Chai LJ, Guo WW, Larkin RM, Xu Q, Morrell PL, Zhou YF*, Deng XX* (2023) Genomic conservation of crop wild relatives: A case study of citrus. PLoS genetics 19(6): e1010811. [作物野生亲缘种的基因组保护：柑橘的案例研究]
Xiao H, Liu ZJ, Wang N, Long QM, Cao S, Huang GZ, Liu WW, Peng YL, Riaz S, Walker AW, Gaut BS*, Zhou YF* (2023) Adaptive and maladaptive introgression in grapevine domestication. PNAS 120(24): e2222041120. [葡萄栽培中的适应性和不适应性渐渗]
Shi XY, Cao S, Wang X, Huang SY, Wang Y, Liu ZJ, Liu WW, Leng XP, Peng YL, Wang N, Wang YW, Ma ZY, Xu XD, Zhang F, Xue H, Zhong HX, Wang Y, Zhang KK, Velt A, Avia K, Holtgräwe D, Grimplet J, Matus JT, Ware D, Wu XY, Wang HB, Liu CH, Fang YL, Rustenholz C*, Cheng ZM*, Xiao H*, Zhou YF* (2023) The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding. Horticulture Research 10(05): uhad061. [葡萄遗传和育种的完整参考基因组]
Morales-Cruz A, Aguirre-Liguori J, Massonnet M, Minio A, Zaccheo M, Cochetel N, Walker A, Riaz S, Zhou YF*, Cantu D*, Gaut BS* (2023) Multigenic resistance to Xylella fastidiosa in wild grapes (Vitis sps.) and its implications within a changing climate. Communications Biology 6(1): 580. [野生葡萄对苛养木杆菌的多基因抵抗及其在气候变化中的影响]
Ma Z Y, Nie Z L, Liu X Q, et al. Phylogenetic relationships, hybridization events, and drivers of diversification of East Asian wild grapes as revealed by phylogenomic analyses[J]. Journal of Systematics and Evolution, 2023, 61(2): 273-283. [系统发育分析揭示了东亚野生葡萄的系统发育关系、杂交事件和多样化驱动因素]
Zhong HX, Liu ZJ, Zhang FC, Zhou XM, Sun XX, Li YY, Liu WW, Xiao H, Wang N, Lu H, Pan MQ*, Wu XY*, Zhou YF* (2022) Metabolomic and transcriptomic analyses reveal the effects of self-and hetero-grafting on anthocyanin biosynthesis in grapevine. Horticulture Research 9: uhac103. [代谢组学和转录组学分析揭示了自体嫁接和异体嫁接对葡萄栽培中花青素生物合成的影响]
Kou Y, Liao Y, Toivainen T, Lv Y, Tian X, Emerson JJ, Gaut BS*, Zhou YF* (2020) Evolutionary genomics of structural variation in Asian rice (Oryza sativa) domestication. Molecular Biology and Evolution 37:3507–3524. [亚洲水稻驯化中结构变异的进化基因组学]
Zhou YF*, Gaut BS* (2020) Large chromosomal variants drive adaptation in sunflowers. Nature plants 6:734–735. [大型染色体变异推动向日葵的适应性演化]
Zhou YF, Muyle A, Gaut BS* (2019) Evolutionary genomics and the domestication of grapes. The grape genome, Dario Cantu and M. Andrew Walker (Eds). [进化基因组学与葡萄的驯化]
Zhou YF, Minio A, Solares E, Lyu Y, Cantu D*, Gaut BS* (2019) Population genetics of structural variation in grapevine domestication. Nature plants, 5, 965–979. [葡萄栽培中结构变异的种群遗传学]
Gaut BS, Seymour D, Liu QP, Zhou YF* (2018) Demography and its effects on genomic variation in crop domestication. Nature plants 4: 512–520. [群体统计学及其对作物驯化中基因组变异的影响]
Tian XM, Wang QY, Zhou YF* (2018) Euphorbia section Hainanensis (Euphorbiaceae), a new section endemic to the Hainan Island of China from biogeographical, karyological, and phenotypical evidence. Frontiers in Plant Science 9: 660. [海南大戟组：来自生物地理学、核型学和表型学证据的中国海南岛特有新组]
Zhou YF, Massonnet M, Sanjak J, Cantu D, Gaut BS* (2017) Evolutionary genomics of grape (Vitis vinifera ssp. vinifera) domestication. PNAS 114: 11715-11720. [葡萄驯化的进化基因组学]
Zhou YF, Duvaux L, Ren G, Zhang LR, Savolainen O, Liu J* (2017) Importance of incomplete lineage sorting and introgression in the origin of shared genetic variation between two closely related pines with overlapping distributions. Heredity 118: 211-220. [不完全谱系分选和内引入在两种重叠分布的密切相关松树共享遗传变异的起源中的重要性]
Zhou YF (2014) Demographic history and climatic adaptation in ecological divergence between two closely related parapatric pine species. Acta Universitatis Ouluensis. A, Scientiae rerum naturalium, ISSN: 0355-3191. [两种密切相关的副生态学松树物种的人口历史和气候适应在生态分化中的作用]
周永锋. Local adaptation to climate in Pinus densata complex[D]. 兰州大学, 2014. [高山松复合体的气候适应]
Zhou YF, Zhang LR, Liu JQ, Wu GL, Savolainen O* (2014) Climatic adaptation and ecological divergence between two closely related pines species in Southeast China. Molecular Ecology 23: 3504–3522. [东南中国两种密切相关的松树物种的气候适应和生态分化]
Zhou YF, Abbott RJ, Jiang ZY, Du, FK, Milne RI, Liu JQ (2010) Gene flow and species delimitation: a case study of two pine species with overlapping distributions in southeast China. Evolution 64: 2342- 2352. [基因流动与物种界定：东南中国重叠分布的两种松树物种的案例研究]
合作发表文章：
Lianzhu Zhou, Shaowei Cui, Hao Zhang, Fanfang Kong, Qi Wang, Zhongyue Wang, Yongfeng Zhou, Shidong Li, Fei Du, Xiaoqing Huang, Yongqiang Liu, Complete genomes of grapevine downy mildew reveal effector cluster evolution driven by complex structural variations, Horticulture Research, 2026;, uhag073, https://doi.org/10.1093/hr/uhag073 [葡萄灰霉病的完整基因组揭示了由复杂结构变异所驱动的效应子簇进化过程]
Zhang Z, Zhang P, Ding Y, et al. Ancient hybridization underlies tuberization and radiation of the potato lineage[J]. Cell, 2025. [古老的杂交作用是马铃薯属物种形成和繁衍的基础。]
Hu M, Wan P, Chen C, et al. Accurate, scalable structural variant genotyping in complex genomes at population scales[J]. Molecular Biology and Evolution, 2025, 42(8): msaf180. [在大规模群体样本中对复杂基因组中的精确且可扩展的结构变异进行基因分型]
Tang S, Liang Y, Wu F, et al. HiMT: An Integrative Toolkit for Assembling Organelle Genomes Using HiFi Reads[J]. Plant Communications, 2025. [HiMT：一种利用高精度读取数据来组装细胞器基因组的综合工具包]
Wang P, Ren T T, You R, et al. A trans-long-chain prenyl diphosphate synthase promotes ubiquinone 10 biosynthesis in grape[J]. Plant Physiology, 2025: kiaf268. [一种长链预烯二磷酸合成酶能够促进葡萄中泛醌 10 的生物合成]
Lian Q, Zhang Y, Zhang J, et al. A genomic variation map provides insights into potato evolution and key agronomic traits[J]. Molecular Plant, 2025, 18(4): 570-589. [基因变异图谱有助于深入了解马铃薯的进化历程及其关键的农艺特性]
Miao H, Zhang J, Zheng Y, et al. Shaping the future of bananas: Advancing genetic trait regulation and breeding in the postgenomics era[J]. Horticulture Research, 2025, 12(5): uhaf044. [塑造香蕉的未来：在后基因组时代推进基因特性调控与育种工作]
Hu M, Wan P, Chen C, et al. Benchmarking, detection, and genotyping of structural variants in a population of whole-genome assemblies using the SVGAP pipeline[J]. bioRxiv, 2025: 2025.02. 07.637096. [使用SVGAP管道对全基因组组装群体中的结构变异进行基准测试、检测和基因分型]
Chaochao Li, Xiaoxue Ye, Zhongxin Jin, Kaisen Huo, Jiangxiang Ma, Weiwei Tie, Zehong Ding, Yongfeng Zhou and Wei Hu. GenoBaits Cassava35K: high-resolution multi-SNP arrays for genetic analysis and molecular breeding using targeted sequencing and liquid chip technology[J]. Horticulture Research, 2025, 12(2): uhae305. [GenoBaits Cassava35K：高分辨率多snp阵列，用于遗传分析和分子育种，使用靶向测序和液体芯片技术]
Lin Cheng, Nan Wang, Zhigui Bao, Qian Zhou, Andrea Guarracino, Yuting Yang, Pei Wang, Zhiyang Zhang, Dié Tang, Pingxian Zhang, Yaoyao Wu, Yao Zhou, Yi Zheng, Yong Hu, Qun Lian, Zhaoxu Ma, Ludivine Lassois, Chunzhi Zhang, William J. Lucas, Erik Garrison, Nils Stein, Thomas Städler, Yongfeng Zhou & Sanwen Huang. Leveraging a phased pangenome for haplotype design of hybrid potato[J]. Nature, 2025: 1-10. [利用分阶段泛基因组进行杂交马铃薯单倍型设计]
Jinzhe Zhang, Hongjun Lyu, Jie Chen, Xue Cao, Ran Du, Liang Ma, Nan Wang, Zhiguo Zhu, Jianglei Rao, Jie Wang, Kui Zhong, Yaqing Lyu, Yanling Wang, Tao Lin, Yao Zhou, Yongfeng Zhou, Guangtao Zhu, Zhangjun Fei, Harry Klee & Sanwen Huang . Releasing a sugar brake generates sweeter tomato without yield penalty[J]. Nature, 2024: 1-10. [释放“糖刹车”可产生无产量损失的甜番茄]
Yuanyuan Luo, Zhenya Liu, Zhongxin Jin, Peng Li, Xibei Tan, Shuo Cao, Xu Wang, Zhongqi Liu, Xiaoya Shi, Siyang Huang, Liyuan Gu, Xiucai Fan, Jianfu Jiang, Lei Sun, Yongfeng Zhou, Chonghuai Liu, Xiaodong Xu*, Zhiyao Ma* and Ying Zhang*. Phased T2T genome assemblies facilitate the mining of disease-resistance genes in Vitis davidii[J]. Horticulture Research, 2024: uhae306. [phased T2T基因组的组装促进了刺葡萄抗病基因的挖掘]
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